from .data_handling import load_dataset, load_scales, load_features, to_fasta
from .feature_engineering import AAclust, AAclustPlot, SequenceFeature, NumericalFeature, CPP, CPPPlot
from .pu_learning import dPULearn, dPULearnPlot
from .explainable_ai import TreeModel, ShapExplainer
from .pertubation import AAMut, AAMutPlot, SeqMut, SeqMutPlot
from .plotting import (plot_get_clist, plot_get_cmap, plot_get_cdict,
                       plot_settings, plot_legend, plot_gcfs,
                       display_df)
from .metrics import (comp_auc_adjusted, comp_bic_score, comp_kld)
from .config import options

__all__ = [
    "load_dataset",
    "load_scales",
    "load_features",
    "to_fasta",
    "AAclust",
    "AAclustPlot",
    "SequenceFeature",
    "NumericalFeature",
    "CPP",
    "CPPPlot",
    "dPULearn",
    "dPULearnPlot",
    "TreeModel", "ShapExplainer",
    "AAMut",
    "AAMutPlot",
    "SeqMut",
    "SeqMutPlot",
    "plot_get_clist",
    "plot_get_cmap",
    "plot_get_cdict",
    "plot_settings",
    "plot_legend",
    "plot_gcfs",
    "display_df",
    "comp_auc_adjusted",
    "comp_bic_score",
    "comp_kld",
    "options"
]


