MANIFEST.in
README.md
requirements.txt
setup.cfg
setup.py
abtools/.DS_Store
abtools/__init__.py
abtools/__init__.pyc
abtools/_compare.py
abtools/_compare.pyc
abtools/_correct.py
abtools/_correct.pyc
abtools/_finder.py
abtools/_finder.pyc
abtools/_phylogeny.py
abtools/_phylogeny.pyc
abtools/_stats.py
abtools/alignment.py
abtools/celeryconfig.py
abtools/cluster.py
abtools/color.py
abtools/database.py
abtools/germlines.py
abtools/jobs.py
abtools/log.py
abtools/mongodb.py
abtools/pipeline.py
abtools/s3.py
abtools/sequence.py
abtools.egg-info/PKG-INFO
abtools.egg-info/SOURCES.txt
abtools.egg-info/dependency_links.txt
abtools.egg-info/pbr.json
abtools.egg-info/requires.txt
abtools.egg-info/top_level.txt
abtools/phylogeny/.DS_Store
abtools/phylogeny/__init__.py
abtools/phylogeny/__init__.pyc
abtools/phylogeny/ab_phylogeny.py
abtools/phylogeny/ab_phylogeny.pyc
abtools/phylogeny/utils/__init__.py
abtools/phylogeny/utils/__init__.pyc
abtools/phylogeny/utils/codons.py
abtools/phylogeny/utils/msa.py
abtools/phylogeny/utils/msa.pyc
abtools/phylogeny/utils/timepoint.py
abtools/phylogeny/utils/timepoint.pyc
abtools/phylogeny/utils/tree.py
abtools/phylogeny/utils/tree.pyc
abtools/queue/__init__.py
abtools/queue/__init__.pyc
abtools/queue/celery.py
abtools/queue/celery.pyc
abtools/queue/celeryconfig.py
abtools/queue/tasks.py
abtools/utils/.DS_Store
abtools/utils/__init__.py
abtools/utils/__init__.pyc
abtools/utils/codons.py
abtools/utils/convert.py
abtools/utils/decorators.py
abtools/utils/decorators.pyc
abtools/utils/progbar.py
abtools/utils/progbar.pyc
abtools/utils/ssh_tunnel.py
abtools/utils/germline_genes/.DS_Store
abtools/utils/germline_genes/9114mouse_D.fasta
abtools/utils/germline_genes/9114mouse_J.fasta
abtools/utils/germline_genes/9114mouse_V.fasta
abtools/utils/germline_genes/b12mouse_D.fasta
abtools/utils/germline_genes/b12mouse_J.fasta
abtools/utils/germline_genes/b12mouse_V.fasta
abtools/utils/germline_genes/human_D.fasta
abtools/utils/germline_genes/human_J.fasta
abtools/utils/germline_genes/human_V.fasta
abtools/utils/germline_genes/macaque_D.fasta
abtools/utils/germline_genes/macaque_J.fasta
abtools/utils/germline_genes/macaque_V.fasta
abtools/utils/germline_genes/mouse_D.fasta
abtools/utils/germline_genes/mouse_J.fasta
abtools/utils/germline_genes/mouse_V.fasta
abtools/utils/germline_genes/rabbit_D.fasta
abtools/utils/germline_genes/rabbit_J.fasta
abtools/utils/germline_genes/rabbit_V.fasta
abtools/utils/germline_genes/vrc01mouse_D.fasta
abtools/utils/germline_genes/vrc01mouse_J.fasta
abtools/utils/germline_genes/vrc01mouse_V.fasta
abtools/utils/matrices/blosum62
abtools/utils/matrices/match1mismatch0
abtools/utils/matrices/match3mismatch2
bin/abcompare
bin/abcorrect
bin/abfinder
bin/abphylogeny
bin/abstats
bin/ssh_tunnel
docs/doc_requirements.txt